ZO615 Introduction to Bioinformatics

6 ECTS - 4-0 Duration (T+A)- . Semester- 4 National Credit

Information

Code ZO615
Name Introduction to Bioinformatics
Term 2022-2023 Academic Year
Semester . Semester
Duration (T+A) 4-0 (T-A) (17 Week)
ECTS 6 ECTS
National Credit 4 National Credit
Teaching Language Türkçe
Level Doktora Dersi
Type Normal
Mode of study Yüz Yüze Öğretim
Catalog Information Coordinator Prof. Dr. ZEYNEL CEBECİ


Course Goal / Objective

This course aims to teach the bioinformatics related databases,pairwise and multiple sequence alignment methods, phylogenetic trees and other visualization techniques, and statistical analysis of biological data.

Course Content

This course covers bioinformatics related databases,pairwise and multiple sequence alignment methods, phylogenetic trees and other visualization techniques, and statistical analysis of biological data.

Course Precondition

No prerequisites

Resources

Şakiroğlu, M. (2020). Bioinformatic Methods for Genomic Analysis. Palme Yayınevi, ISBN 9786052825419

Notes

Lesk, A. (2019). Introduction to bioinformatics. Oxford university press.


Course Learning Outcomes

Order Course Learning Outcomes
LO01 Undestands the essentials of bilological information essentials.
LO02 Use the biological information databases.
LO03 Learns the gene and protein sequence alignment algorithms.
LO04 Generates and interprets phylogenetic trees.


Relation with Program Learning Outcome

Order Type Program Learning Outcomes Level
PLO01 Bilgi - Kuramsal, Olgusal After undergraduate education, increases knowledge in one of the fields of animal breeding and breeding, feeds and animal nutrition, biometrics and genetics. 3
PLO02 Bilgi - Kuramsal, Olgusal Understands the interaction between different disciplines 1
PLO03 Bilgi - Kuramsal, Olgusal Gains the ability to develop strategic approaches and produce regional, national or international solutions for the field of animal science
PLO04 Bilgi - Kuramsal, Olgusal Gains the ability to develop knowledge with scientific methods by using the data in animal science, and to use this knowledge with the awareness of scientific, social and ethical responsibility. 2
PLO05 Bilgi - Kuramsal, Olgusal Gains the ability to use and develop information technologies with computer software and hardware knowledge required by the field of animal science. 5
PLO06 Bilgi - Kuramsal, Olgusal Gains the ability to convey their own studies or current developments in the field of animal science to groups in the field or other fields of science, verbally and visually.
PLO07 Bilgi - Kuramsal, Olgusal Gains the ability to evaluate the quality processes of animal products
PLO08 Bilgi - Kuramsal, Olgusal Gains the ability to keep animal production dynamic in accordance with changing economic and social conditions.
PLO09 Bilgi - Kuramsal, Olgusal Gains the ability to follow national and international current issues, to follow developments in lifelong learning, science and technology, to constantly renew themselves and to transfer innovations to animal production.
PLO10 Bilgi - Kuramsal, Olgusal Hayvansal ürünler ile insan sağlığı ve toplum refahı arasındaki ilişkiyi özümser


Week Plan

Week Topic Preparation Methods
1 Introduction to bioinformatics Searching for the learning resources on the Internet, reading the tutorials, lecture notes and textbooks, and problem solving related with the topic. Öğretim Yöntemleri:
Alıştırma ve Uygulama
2 Biological information and the related databases Searching for the learning resources on the Internet, reading the tutorials, lecture notes and textbooks, and problem solving related with the topic. Öğretim Yöntemleri:
Alıştırma ve Uygulama
3 Pairwise sequence alignment Searching for the learning resources on the Internet, reading the tutorials, lecture notes and textbooks, and problem solving related with the topic. Öğretim Yöntemleri:
Alıştırma ve Uygulama
4 Database similarity querying Searching for the learning resources on the Internet, reading the tutorials, lecture notes and textbooks, and problem solving related with the topic. Öğretim Yöntemleri:
Alıştırma ve Uygulama
5 Multiple sequence alignment Searching for the learning resources on the Internet, reading the tutorials, lecture notes and textbooks, and problem solving related with the topic. Öğretim Yöntemleri:
Alıştırma ve Uygulama
6 Genes ontologies and databases Searching for the learning resources on the Internet, reading the tutorials, lecture notes and textbooks, and problem solving related with the topic. Öğretim Yöntemleri:
Alıştırma ve Uygulama
7 Generation of phylogenetic trees Searching for the learning resources on the Internet, reading the tutorials, lecture notes and textbooks, and problem solving related with the topic. Öğretim Yöntemleri:
Alıştırma ve Uygulama
8 Mid-Term Exam Preparation for the exam Ölçme Yöntemleri:
Sözlü Sınav, Ödev
9 Protein structure essentials Searching for the learning resources on the Internet, reading the tutorials, lecture notes and textbooks, and problem solving related with the topic. Öğretim Yöntemleri:
Alıştırma ve Uygulama
10 Protein structure visualization Searching for the learning resources on the Internet, reading the tutorials, lecture notes and textbooks, and problem solving related with the topic. Öğretim Yöntemleri:
Alıştırma ve Uygulama
11 Genome mapping and assembly Searching for the learning resources on the Internet, reading the tutorials, lecture notes and textbooks, and problem solving related with the topic. Öğretim Yöntemleri:
Alıştırma ve Uygulama
12 Installation of R and working with R packages Searching for the learning resources on the Internet, reading the tutorials, lecture notes and textbooks, and problem solving related with the topic. Öğretim Yöntemleri:
Alıştırma ve Uygulama
13 Case studies (1) Searching for the learning resources on the Internet, reading the tutorials, lecture notes and textbooks, and problem solving related with the topic. Öğretim Yöntemleri:
Gösterip Yaptırma
14 Case studies (2) Searching for the learning resources on the Internet, reading the tutorials, lecture notes and textbooks, and problem solving related with the topic. Öğretim Yöntemleri:
Gösterip Yaptırma
15 Case studies (3) Searching for the learning resources on the Internet, reading the tutorials, lecture notes and textbooks, and problem solving related with the topic. Öğretim Yöntemleri:
Gösterip Yaptırma
16 Term Exams Preparation for the exam Ölçme Yöntemleri:
Sözlü Sınav, Ödev
17 Term Exams Preparation for the exam Ölçme Yöntemleri:
Sözlü Sınav, Ödev


Student Workload - ECTS

Works Number Time (Hour) Workload (Hour)
Course Related Works
Class Time (Exam weeks are excluded) 14 4 56
Out of Class Study (Preliminary Work, Practice) 14 4 56
Assesment Related Works
Homeworks, Projects, Others 0 0 0
Mid-term Exams (Written, Oral, etc.) 1 12 12
Final Exam 1 28 28
Total Workload (Hour) 152
Total Workload / 25 (h) 6,08
ECTS 6 ECTS

Update Time: 17.11.2022 11:37