TÜRKÇE
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Information
| Code | BLS402 |
| Name | Bioinformatics |
| Term | 2024-2025 Academic Year |
| Semester | 8. Semester |
| Duration (T+A) | 2-0 (T-A) (17 Week) |
| ECTS | 4 ECTS |
| National Credit | 2 National Credit |
| Teaching Language | Türkçe |
| Level | Lisans Dersi |
| Type | Normal |
| Mode of study | Yüz Yüze Öğretim |
| Catalog Information Coordinator | Dr. Öğr. Üyesi İbrahim BOGA |
| Course Instructor |
1 |
Course Goal / Objective
The aim of this course is to provide students with experience in bioinformatics applications in molecular genetic methods.
Course Content
In this course, basic bioinformatics training and applications are covered.
Course Precondition
none
Resources
Applied Bioinformatics,Paul M.Selzer, Richard J.Marhöferü Oliver Koc,
Notes
Bioinformatics Fundamentals and Applications,Mehmet Cengiz Baloğlu
Course Learning Outcomes
| Order | Course Learning Outcomes |
|---|---|
| LO01 | Explains the field of study of bioinformatics. |
| LO02 | To get an idea about the usage areas of bioinformatics |
| LO03 | To understand the relationship between molecular genetics methods and bioinformatics |
| LO04 | Getting to know bioinformatics software and databases |
| LO05 | Gains practice in next generation sequencing studies |
| LO06 | Gains practice in large-scale gene expression analysis |
| LO07 | Explains the application areas of meta-analyses |
| LO08 | Explains the importance of bioinformatics in omics analysis. |
Relation with Program Learning Outcome
| Order | Type | Program Learning Outcomes | Level |
|---|---|---|---|
| PLO01 | Bilgi - Kuramsal, Olgusal | Explain the basic concepts and principles in biology | 3 |
| PLO02 | Bilgi - Kuramsal, Olgusal | The knowledge gained in the field of biology combine with information from other sciences. | 2 |
| PLO03 | Bilgi - Kuramsal, Olgusal | Identifies problems in the field of biology and apply methods for their solution | 2 |
| PLO04 | Bilgi - Kuramsal, Olgusal | Describes the method of producing scientific knowledge in the field of biology | 3 |
| PLO05 | Bilgi - Kuramsal, Olgusal | They will receive information on the biology area, in order to classify it uses and purposes. | 2 |
| PLO06 | Bilgi - Kuramsal, Olgusal | They use advanced theoretical and practical knowledge that obtain in biology field. | |
| PLO07 | Bilgi - Kuramsal, Olgusal | They are Field-related issues can inform the relevant persons and institutions, They share ideas and problems relating to suggestions as the written, oral and Visual to expert or transfer to non-experts. | |
| PLO08 | Bilgi - Kuramsal, Olgusal | They can take responsibility as individuals and team members to solve unpredictable problems encountered in applications related to the field. | |
| PLO09 | Bilgi - Kuramsal, Olgusal | they can take an active role as a member of the execution team the planning of projects related to the field. | |
| PLO10 | Beceriler - Bilişsel, Uygulamalı | They know that life-long learning process and act accordingly. | |
| PLO11 | Yetkinlikler - Bağımsız Çalışabilme ve Sorumluluk Alabilme Yetkinliği | They will increase the knowledge and experience outside major issues with specific elective courses in different fields of biology. | |
| PLO12 | Yetkinlikler - Bağımsız Çalışabilme ve Sorumluluk Alabilme Yetkinliği | They speak English enough to communicate with colleagues to understand the basic concepts of biology. | 1 |
| PLO13 | Yetkinlikler - Bağımsız Çalışabilme ve Sorumluluk Alabilme Yetkinliği | They both with colleagues, as well as areas with non-person establishes ethical uses of information and communication technology. In addition to professional development, in line with the interests and abilities of scientific, social, constantly improves itself by identifying learning needs in cultural and artistic fields. | 2 |
| PLO14 | Yetkinlikler - Öğrenme Yetkinliği | They assesses developments in biology versatile using scientific methods and techniques | 2 |
| PLO15 | Yetkinlikler - Öğrenme Yetkinliği | They know the importance of personal development and enforces the need. |
Week Plan
| Week | Topic | Preparation | Methods |
|---|---|---|---|
| 1 | Introduction to bioinformatics | No preparation required | Öğretim Yöntemleri: Anlatım |
| 2 | Fundamental applications of bioinformatics | No preparation required | Öğretim Yöntemleri: Anlatım |
| 3 | Use of bioinformatics in molecular genetics | No preparation required | Öğretim Yöntemleri: Anlatım, Soru-Cevap |
| 4 | Bioinformatics in biology | No preparation required | Öğretim Yöntemleri: Anlatım |
| 5 | Bioinformatics in sequencing methods | No preparation required | Öğretim Yöntemleri: Anlatım |
| 6 | Next Generation Sequencing (NGS) | No preparation required | Öğretim Yöntemleri: Anlatım, Gösterip Yaptırma |
| 7 | Use of Next Generation Sequencing (YND) Systems in Biology | No preparation required | Öğretim Yöntemleri: Anlatım, Gösterip Yaptırma |
| 8 | Mid-Term Exam | No preparation required | Ölçme Yöntemleri: Ödev, Yazılı Sınav, Sözlü Sınav, Performans Değerlendirmesi |
| 9 | Bioinformatics applications of next-generation sequencing | No preparation required | Öğretim Yöntemleri: Alıştırma ve Uygulama, Grup Çalışması |
| 10 | Create of NGS pipelines | No preparation required | Öğretim Yöntemleri: Anlatım |
| 11 | Quality control of datas | No preparation required | Öğretim Yöntemleri: Anlatım |
| 12 | Bioinformatic Applications-I | No preparation required | Öğretim Yöntemleri: Alıştırma ve Uygulama, Gösterip Yaptırma |
| 13 | Bioinformatic Applications-II | No preparation required | Öğretim Yöntemleri: Alıştırma ve Uygulama, Gösterip Yaptırma |
| 14 | Analysis tools in variant analysis | No preparation required | Öğretim Yöntemleri: Anlatım, Soru-Cevap |
| 15 | Databases and bioinformatics guides | No preparation required | Öğretim Yöntemleri: Anlatım, Soru-Cevap |
| 16 | Term Exams | No preparation required | Ölçme Yöntemleri: Yazılı Sınav, Sözlü Sınav, Ödev, Performans Değerlendirmesi |
| 17 | Term Exams | No preparation required | Ölçme Yöntemleri: Ödev, Yazılı Sınav, Sözlü Sınav, Performans Değerlendirmesi |
Student Workload - ECTS
| Works | Number | Time (Hour) | Workload (Hour) |
|---|---|---|---|
| Course Related Works | |||
| Class Time (Exam weeks are excluded) | 14 | 2 | 28 |
| Out of Class Study (Preliminary Work, Practice) | 14 | 2 | 28 |
| Assesment Related Works | |||
| Homeworks, Projects, Others | 0 | 0 | 0 |
| Mid-term Exams (Written, Oral, etc.) | 1 | 5 | 5 |
| Final Exam | 1 | 40 | 40 |
| Total Workload (Hour) | 101 | ||
| Total Workload / 25 (h) | 4,04 | ||
| ECTS | 4 ECTS | ||